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Total result(s) found: 47
  • Sandra M. Schmöckel, Damien J. Lightfoot, Rozaimi Razali, Mark Tester and David E. Jarvis. Identification of Putative Transmembrane Proteins Involved in Salinity Tolerance in Chenopodium quinoa by Integrating Physiological Data, RNAseq, and SNP Analyses. Frontiers in Plant Science. doi: 10.3389/fpls.2017.01023
Keywords:
Quinoa, Chenopodium quinoa, hydroponics, salinity tolerance, RNAseq, plant physiology, transporters, comparative genomics
  • Joanne Tilbrook, Rhiannon K. Schilling, Bettina Berger, Alexandre F. Garcia, Christine Trittermann, Stewart Coventry, Huwaida Rabie, Chris Brien, Martin Nguyen, Mark Tester and Stuart J. Roy. Variation in shoot tolerance mechanisms not related to ion toxicity in barley. Functional Plant Biology. https://doi.org/10.1071/FP17049
Keywords:
Hordeum spp., osmotic stress, plant growth, plant phenomics, salt tolerance
  • Adil Salhi, Sónia Negrão, Magbubah Essack, Mitchell J. L. Morton, Salim Bougouffa, Rozaimi Razali , Aleksandar Radovanovic, Benoit Marchand, Maxat Kulmanov, Robert Hoehndorf, Mark Tester & Vladimir B. Bajic. DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. Scientific Reports. DOI:10.1038/s41598-017-05448-0
Keywords:
Data mining, Plant sciences
  • Kasra Sabermanesh, Luke R. Holtham, Jessey George, Ute Roessner, Berin A. Boughton, Sigrid Heuer, Mark Tester, Darren C. Plett, and Trevor P. Garnett. Transition from a maternal to external nitrogen source in maize seedlings. Journal of Integrative Plant Biology. DOI: 10.1111/jipb.12525
Keywords:
Amino acids; NPF; NRT; Zea mays; nitrate uptake; nitrogen use efficiency; roots; seed; seedling
  • Rui Meng, Stephanie Saade, Sebastian Kurtek, Bettina Berger, Chris Brien, Klaus Pillen, Mark Tester and Ying Sun. Growth curve registration for evaluating salinity tolerance in barley. Plant Methods. DOI 10.1186/s13007-017-0165-7
Keywords:
Functional ANOVA model, High-throughput phenotyping, Nested association mapping, Plant growth, Spatial variation, Temporal variation
Keywords:
Genotyping-by-sequencing, Solanum cheesmaniae, Solanum galapagense, genetic diversity, biogeography, tomato, wild relatives, Galapagos Islands
  • David E. Jarvis, Yung Shwen Ho, Damien J. Lightfoot, Sandra M. Schmöckel, Bo Li, Theo J. A. Borm, Hajime Ohyanagi, Katsuhiko Mineta, Craig T. Michell, Noha Saber, Najeh M. Kharbatia, Ryan R. Rupper, Aaron R. Sharp, Nadine Dally, Berin A. Boughton, Yong H. WooGe Gao, Elio G. W. M. Schijlen, Xiujie Guo, Afaque A. Momin, Sónia NegrãoSalim Al-Babili, Christoph Gehring, Ute Roessner, Christian Jung, Kevin Murphy, Stefan T. Arold, Takashi Gojobori, C. Gerard van der Linden, Eibertus N. van Loo, Eric N. Jellen, Peter J. Maughan & Mark Tester. The genome of Chenopodium quinoa. Nature. doi:10.1038/nature21370
  • ​Nature - News & Views​
Keywords:
N/A
  • Bo Li, Mark Tester and Matthew Gilliham. Chloride on the Move. Trends in Plant Science. DOI: http://dx.doi.org/10.1016/j.tplants.2016.12.004
Keywords:
Long-distance transport, NPF2.4, SLAH1, CCC, GmSALT3, ALMT9
  • Rhiannon K. Schilling, Mark Tester, Petra Marschner, Darren C. Plett, and Stuart J. Roy. AVP1: One Protein, Many Roles. Trends in Plant Science. http://dx.doi.org/10.1016/j.tplants.2016.11.012
Keywords:
H+-pyrophosphatase; vacuole; pyrophosphate; sucrose; plant growth
  • Bo Li, Jiaen Qiu, Maheswari Jayakannan, Bo Xu, Yuan Li, Gwenda M. Mayo, Mark Tester, Matthew Gilliham and Stuart J. Roy. AtNPF2.5 Modulates Chloride (Cl−) Efflux from Roots of Arabidopsis thaliana. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2016.02013
Keywords:
Arabidopsis thaliana, chloride transport, MIFE, NPF2.5, salinity tolerance, TEVC
Keywords:
Genome-wide association studies, Plant genetics, Salt
  • ​​Sandra Schmöckel, David Jarvis. Salt Stress. Encyclopedia of Applied Plant Sciences (Second Edition). http://dx.doi.org/10.1016/B978-0-12-394807-6.00086-1
Keywords:
Abiotic stress; Conventional crop breeding; Genetic engineering; Ionic phase; NaCl stress; Salinity tolerance mechanisms; Salt stress; Shoot ion-independent phase
Keywords:
Assessing salinity tolerance, salt-imposition systems, quantifying physiological traits, analysing salinity data, tolerance indices, salt stress phenotyping, osmotic stress
  • ​Jessey George, Luke Holtham, Kasra Sabermanesh, Sigrid Heuer, Mark Tester, Darren Plett and Trevor Garnett. Small amounts of ammonium (NHþ4) can increase growth of maize (Zea mays). Journal of Plant Nutrition and Soil Science. DOI: 10.1002/jpln.201500625
Keywords:
Ammonium, nitrate, ion fluxes, N uptake, N budget
  • ​Tepsuda Rungrat, Mariam Awlia, Tim Brown, Riyan Cheng, Xavier Sirault, Jiri Fajkus, Martin Trtilek, Bob Furbank, Murray Badger, Mark Tester, Barry J Pogson, Justin O Borevitz and Pip Wilson. Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery. The Arabidopsis Book 14:e0185. DOI:10.1199/tab.0185
Keywords:
N/A
Keywords:
High-throughput phenotyping, Arabidopsis thaliana, salt stress, shoot-ion independent tolerance, kinetic chlorophyll fluorescence imaging, Color segmentation
  • ​Stephanie Saade, Andreas Maurer, Mohammed Shahid, Helena Oakey, Sandra M. Schmöckel, Sónia Negrão, Klaus Pillen & Mark Tester. Supplementary information - Yield-related salinity tolerance traits identified in a nested association mapping (NAM) population of wild barley. Nature Scientific Reports. doi:10.1038/srep32586
Keywords:
N/A
  • ​Stephanie Saade, Andreas Maurer, Mohammed Shahid, Helena Oakey, Sandra M. Schmöckel, Sónia Negrão, Klaus Pillen & Mark Tester. Yield-related salinity tolerance traits identified in a nested association mapping (NAM) population of wild barley. Nature Scientific Reports. doi:10.1038/srep32586
Keywords:
Barley, Plant hybridization, Salt
  • ​​Darren Plett, Luke Holtham, Ute Baumann, Elena Kalashyan, Karen Francis, Akiko Enju, John Toubia, Ute Roessner, Antony Bacic, Antoni Rafalski, Kanwarpal S. Dhugga, Mark Tester, Trevor Garnett, Brent N. Kaiser. Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms. Plant Molecular Biology. DOI 10.1007/s11103-016-0512-5
Keywords:
Nitrogen use efficiency, NUE, Nitrogen metabolism, Amino acids, Enzyme activity, Transcript abundance
  • ​Jiaen Qiu, Sam W Henderson, Mark Tester, Stuart J Roy and Mathew Gilliham. SLAH1, a homologue of the slow type anion channel SLAC1, modulates shoot Cl− accumulation and salt tolerance in Arabidopsis thaliana. Journal of Experimental Botany. doi: 10.1093/jxb/erw237
Keywords:
ABA, Arabidopsis, AtSLAH1, AtSLAH3, chloride, Cl− xylem loading, long-distance transport, nutrition, salinity, slow-type anion channel-associated homologue 1, slow-type anion channel-associated homologue 3
  • Darren Plett, Ute Baumann, Andreas W. Schreiber, Luke Holtham, Elena Kalashyan, John Toubia, John Nau, Mary Beatty, Antoni Rafalski, Kanwarpal S. Dhugga, Mark Tester, Trevor Garnett, Brent N. Kaiser. Maize maintains growth in response to decreased nitrate supply through a highly dynamic and developmental stage-specific transcriptional response. Plant Biotechnology. doi: 10.1111/pbi.12388
Keywords:
N/A
  • Bo Li, Caitlin Byrt, Jiaen Qiu, Ute Baumann, Maria Hrmova, Aurelie Evrard, Alexander A.T. Johnson, Kenneth D. Birnbaum, Gwenda M. Mayo, Deepa Jha, Sam W. Henderson, Mark Tester*, Mathew Gilliham*, and Stuart J. Roy. Identification of a Stelar-Localized Transport Protein That Facilitates Root-to-Shoot Transfer of Chloride in Arabidopsis. Plant Physiology. doi: 10.1104/pp.15.01163​​
Keywords:
N/A
  • Stuart Roy and Mark TesterSalinity tolerance in plants. United States Patent​​
Keywords:
N/A
  • Andreas Savvides, Shawkat Ali, Mark Tester and Vasileios Fotopoulos. Chemical Priming of Plants Against Multiple Abiotic Stresses: Mission Possible? Trends in Plant Science Cell Press. doi:10.1016/j.tplants.2015.11.003
Keywords:
Melatonin, polyamines, reactive species, stress tolerance, systemic resistance
  • Trevor Garnett, Darren Plett, Vanessa Conn, Simon Conn, Huwaida Rabie, J. Antoni Rafalski, Kanwarpal Dhugga, Mark A. Tester and Brent N. Kaiser.
    Variation for N Uptake System in Maize: Genotypic Response to N Supply. Front. Plant Sci., 09 November 2015 | http://dx.doi.org/10.3389/fpls.2015.00936
Keywords:
N, nitrate, ammonium, nitrogen use efficiency, NUE, uptake, Zea mays
  • Takahashi F, Tilbrook J, Trittermann C, Berger B, Roy SJ, Seki M, Shinozaki K, Tester M. (2015) Comparison of Leaf Sheath Transcriptome Profiles with Physiological Traits of Bread Wheat Cultivars under Salinity Stress. PLoS ONE 10(8): e0133322. doi:10.1371/journal.pone.0133322
Keywords:
Salinity, Gene expression, Plant resistance to abiotic stress, Wheat, Bread, Genomic databases, Rice, Microarrays
  • K. Shahzad, M. Rauf, M. Ahmed, Z. A. Malik, I. Habib, Z. Ahmed, K. Mahmood, R. Ali, K. Masmoudi, F. Lemtiri-Chlieh, C. Gehring, G. A. Berkowitz & N. A. Saeed. Functional characterisation of an intron retaining K+ transporter of barley reveals intron-mediated alternate splicing. Plant Biology doi:10.1111/plb.12290
Keywords:
Alternate splicing; functional complementation; HvHKT2; intron retention; transcriptional gene regulation; transporters and channels.
  • Shawkat Ali , Maxime Magne, Shiyan Chen, Natasa Obradovic, Lubna Jamshaid, Xiaohong Wang, Guy Bélair and Peter Moffett. Analysis of Globodera rostochiensis effectors reveals conserved functions of SPRYSEC proteins in suppressing and eliciting plant immune responses. Frontiers in Plant Science doi: 10.3389/fpls.2015.00623
Keywords:
Globodera, plant-parasitic nematode, cyst nematodes, NB-LRR proteins, effector proteins, PAMP-triggered immunity(PTI), SPRYSEC
  • Plett, D., Baumann, U., Schreiber, A.W., Holtham, L., Kalashyan, E., Toubia, J., Nau, J., Beatty, M., Rafalski, A., Dhugga, K., Tester, M., Garnett, T. & Kaiser, B.N. (2015) Maize maintains growth in response to decreased nitrate supply through a highly dynamic and developmental stage-specific transcriptional response. Plant Biotechnology Journal, doi: 10.1111/pbi.12388

Keywords:
N use efficiency; NRT2; gene cluster analysis; high-affinity nitrate transporter; lipid metabolism; microarray
  • ​Shawkat Ali, Maxime Magne, Shiyan Chen, Olivier Côté, Barbara Gerič Stare, Natasa Obradovic, Lubna Jamshaid, Xiaohong Wang, Guy Bélair, Peter Moffett. Analysis of Putative Apoplastic Effectors from the Nematode, Globodera rostochiensis, and Identification of an Expansin-Like Protein That Can Induce and Suppress Host Defenses (2015). PLoS ONE 10(1): e0115042. doi:10.1371/ journal.pone.0115042
Keywords:
Nematode, Globodera rostochiensis
Keywords:
Plant phenotyping, Image processing, Plant architecture
  • Shawkat Ali, Guus Bakkeren​. Conversion of BAC Clones into Binary BAC (BIBAC) Vectors and Their Delivery into Basidiomycete Fungal Cells Using Agrobacterium tumefaciens (2014). Methods in Molecular Biology Volume 1227, 2015, pp 199-215. DOI 10.1007/978-1-4939-1652-8_9​
Keywords:
BIBAC, Fungal Cells, Agrobacterium tumefaciens
  • Shawkat Ali, John D. Laurie, Rob Linning, José Antonio Cervantes-Chávez, Denis Gaudet, Guus Bakkeren
    Published: July 3, 2014 DOI: 10.1371/journal.ppat.1004223
Keywords:
Barley, Ustilago hordei
  • Aris Hairmansis, Bettina Berger, Mark Tester and Stuart John Roy. Image-based phenotyping for non-destructive screening of different salinity tolerance traits in rice. Hairmansis et al. Rice 2014, 7:16
Keywords:
Rice (Oryza sativa L.); Salinity tolerance; Phenotyping; Image analysis; Growth; Senescence
  • Caitlin Siobhan Byrt, Bo Xu, Mahima Krishnan, Damien James Lightfoot, Asmini Athman, Andrew Keith
    Jacobs, Nathan S. Watson-Haigh, Darren Plett, Rana Munns, Mark Tester and Matthew Gilliham. The Na+ transporter, TaHKT1;5-D, limits shoot Na+ accumulation in bread wheat. The Plant Journal (2014) 80, 516–526
Keywords:
wheat, Triticum aestivum, sodium exclusion, HKT, salt tolerance, RNA interference.
  • Bianca Kyriacou, Katie L. Moore, David Paterson, Martin D. de Jonge, Daryl L. Howard, James Stangoulis, Mark Tester, Enzo Lombi, Alexander A.T. Johnson, Localization of iron in rice grain using synchrotron X-ray fluorescence microscopy and high resolution secondary ion mass spectrometry, Journal of Cereal Science, Volume 59, Issue 2, March 2014, Pages 173-180.
Keywords:
Biofortification, phytate, IP6, bioavailability
  • Schilling RK, Marschner P, Shavrukov Y, Berger B, Tester M, Roy SJ, Plett DC. Expression of the Arabidopsis vacuolar H⁺-pyrophosphatase gene (AVP1) improves the shoot biomass of transgenic barley and increases grain yield in a saline field. Plant Biotechnol J. 2014 Apr;12(3):378-86. doi: 10.1111/pbi.12145. Epub
Keywords:
Barley, salinity, AVP1, nondestructive imaging, grain yield, GM field trials.
  • Honsdorf N, March TJ, Berger B, Tester M, Pillen K. High-Throughput, Phenotyping to Detect Drought Tolerance QTL in Wild Barley Introgression Lines. PLoS One. 2014 May 13;9(5):e97047. doi: 10.1371/journal.pone.0097047. eCollection, 2014. PubMed PMID: 24823485.
Keywords:
Barley, chromosomes, flowering plants, fluorescence imaging, imaging techniques, introgression, leaves, phenotypes
  • Roy, S.J., Negrão, S. & Tester, M. (2014) Salt resistant crop plants. Current Opinion in Biotechnology 26: 115-124.
Keywords:
Salinity tolerance, review, abiotic stress, crop improvement, yield maintenance.
  • Garnett, T., Conn, V., Plett, D., Conn, S., Zanghellini, J., Mackenzie, N., Enju, A., Francis, K., Holtham, L., Roessner, U., Boughton, B., Bacic, A., Shirley, N., Rafalski, A., Dhugga, K., Tester, M & Kaiser, B. (2013) The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle. New Phytologist 198: 82-94
Keywords:
Maize, nitrate, nitrogen, nitrogen use efficiency (NUE), uptake.
  • Shavrukov, Y., Bovill, J., Afzal, I., Hayes, J., Roy, S., Tester, M. & Collins, N. (2013) HVP10 encoding V-PPase is a prime candidate for the barley HvNax3 sodium exclusion gene: evidence from fine mapping and expression analysis Planta 237: 1111-1122
Keywords:
HvFT, HvVRT2, Na+exclusion, salinity tolerance, vacuolar H+-pyrophosphatase.
  • ​Roy, S.J., Huang, W., Wang, X., Evrard, A., Schmöckel, S., Zafar, Z.U. and Tester, M. (2013) A novel protein kinase involved in Na+ exclusion revealed from positional cloning. Plant Cell & Environment 35: 553-568.  doi: 10.1111/j.1365-3040.2012.02595.x.

Keywords:
Arabidopsis, barley, AtCIPK16, QTL mapping.
  • Shelden, M.C., Roessner, U., Sharp, R.E., Tester, M. & Bacic, A. (2013) Genetic variation in the root growth response of barley genotypes to salinity stress. Functional Plant Biology,
Keywords:
abiotic stress, cereals, osmotic stress, root elongation, salt tolerance, seminal roots.
  • Hill, C.B., Jha, D., Bacic, A., Tester, M. & Roessner, U. (2013) Characterization of ion contents and metabolic responses to salt stress of different Arabidopsis AtHKT1;1 genotypes and their parental strains. Molecular Plant6: 350-368
Keywords:
Abiotic stress, salinity, salt tolerance, HKT, sodium transporter, metabolomics, enhancer trap system.
  • Berger, B., de Regt, B. and Tester, M. (2013) Applications of high-throughput plant phenotyping to study nutrient use efficiency. Methods in Molecular Biology 953: 277-290.  DOI: 10.1007/978-1-62703-152-3_18
Keywords:
High-throughput phenotyping, shoot imaging, growth analysis, nutrient use efficiency, RGB, leaf color
  • Brien, C.J., Berger, B., Rabie, H. & Tester, M. (2013) Accounting for variation in designing greenhouse experiments with special reference to greenhouses containing plants on conveyor systems. Plant Methods 9: DOI: 10.1186/1746-4811-9-5 
Keywords:
Automated phenotyping, conveyor system, greenhouse experiments, greenhouse experimental design, microclimate variation, plant relocation, statistical analysis, thigmomorphogensis.